PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447779.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 203aa    MW: 22473.6 Da    PI: 4.7731
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.2e-053355123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_016447779.1 33 YTCTFCRREFRSAQALGGHMNVH 55
                    9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-63059No hitNo description
PROSITE profilePS5015711.1573360IPR007087Zinc finger, C2H2
PfamPF139121.4E-53356IPR007087Zinc finger, C2H2
SMARTSM003550.00663355IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MWKPKDDDDS WEIRAFEEDT SNSMGATWPP RSYTCTFCRR EFRSAQALGG HMNVHRRDRA  60
KLNQTPLASN SSTTFPNANS TLLIQTPEFI TNGGLCLLYS LPNNPNTIFN PSTVNSSVDP  120
STLLTIPPSF MNNLMSSCTP PSLNFPINQP QNINSSSNTS ETSASNGTSN DNNHYDGSSK  180
RDSVIEDEID LELRLGWRSS SSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-142855229superman protein
2l1o_A7e-142855229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774368.11e-147PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_016447779.11e-147PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLM0ZPS84e-89M0ZPS8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000053761e-88(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-31C2H2 family protein